Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs146753238 chr9:72858183 C/T 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs146851253 chr15:83251513 C/G 3.09E-6 485 30.87 31.02 29.17 KM Plot
PRAD rs146856055 chr8:71541636 C/T 5.72E-7 492 31.25 29.97 24.27 KM Plot
PRAD rs1468734 chr16:5001304 G/A 5.2E-5 471 31.35 29.63 27.77 KM Plot
PRAD rs146880902 chr11:129974653 GA/G 2.0E-6 492 30.97 32.22 22.8 KM Plot
PRAD rs146897955 chr5:154158596 C/CT 0 489 30.27 33.47 4.87 KM Plot
PRAD rs146951003 chr1:93573825 T/TTG 2.23E-5 483 31.38 28.13 20.9 KM Plot
PRAD rs146991082 chr11:71558147 G/A 6.03E-5 491 31.27 26.8 20.93 KM Plot
PRAD rs147055859 chr2:204827209 C/T 3.27E-5 491 30.87 31.63 20.33 KM Plot
PRAD rs147101217 chr4:185166986 G/A 2.47E-11 491 31.65 28.1 20.93 KM Plot
PRAD rs147234430 chr5:154165782 G/A 0 491 30.2 33.47 4.87 KM Plot
PRAD rs147248036 chr15:83373033 T/C 4.15E-7 491 31.23 30.55 29.08 KM Plot
PRAD rs147489102 chr5:179022177 TTACTAAAAA/T 1.7E-12 485 30.73 35.8 18.88 KM Plot
PRAD rs147557078 chr2:242641864 C/T 0.000101 479 30.75 31.8 29.63 KM Plot
PRAD rs147705898 chr6:43304668 GATATAT/G 5.07E-10 485 31.27 28.57 44.3 KM Plot